Entirely off-grid and solar-powered DNA sequencing of microbial communities during an ice cap traverse expedition

dc.contributorHáskólinn á Akureyrien_US
dc.contributorUniversity of Akureyrien_US
dc.contributorHáskóli Íslandsen_US
dc.contributorUniversity of Icelanden_US
dc.contributor.authorGowers, Glen-Oliver. F.
dc.contributor.authorVince, Oliver
dc.contributor.authorCharles, John-Henry
dc.contributor.authorKlarenberg, Ingeborg J.
dc.contributor.authorEllis, Tom
dc.contributor.authorEdwards, Arwyn
dc.contributor.departmentAuðlindadeild (HA)en_US
dc.contributor.departmentFaculty of Natural Resource Sciences (UA)en_US
dc.contributor.departmentLíf- og umhverfisvísindadeild (HÍ)en_US
dc.contributor.departmentFaculty of Life and Environmental Sciences (UI)en_US
dc.contributor.schoolViðskipta- og raunvísindasvið (HA)en_US
dc.contributor.schoolSchool of Business and Science (UA)en_US
dc.contributor.schoolVerkfræði- og náttúruvísindasvið (HÍ)en_US
dc.contributor.schoolSchool of Engineering and Natural Sciences (UI)en_US
dc.date.accessioned2019-11-23T10:19:28Z
dc.date.available2019-11-23T10:19:28Z
dc.date.issued2019-11-07
dc.description.abstractMicrobial communities in remote locations remain under-studied. This is particularly true on glaciers and icecaps, which cover approximately 11% of the Earth’s surface. The principal reason for this is the inaccessibility of most of these areas due to their extreme isolation and challenging environmental conditions. While remote research stations have significantly lowered the barrier to studying the microbial communities on icecaps, their use has led to a bias for data collection in the near vicinity of these institutions. Here, miniaturisation of a DNA sequencing lab suitable for off-grid metagenomic studies is demonstrated. Using human power alone, this lab was transported across Europe’s largest ice cap (Vatnajökull, Iceland) by ski and sledge. After 11 days of unsupported polar-style travel, a metagenomic study of a geothermal hot spring gorge was conducted on the remote northern edge of the ice cap. This tent-based metagenomic study resulted in over 24 h of Nanopore sequencing, powered by solar power alone. This study demonstrates the ability to conduct DNA sequencing in remote locations, far from civilised resources (mechanised transport, external power supply, internet connection, etc.), whilst greatly reducing the time from sample collection to data acquisition.en_US
dc.description.sponsorshipThe following sources of funding enabled the “Return to Vatnajökull” expedition with its wider historical and scientific objectives: Andrew Croft Memorial Fund, AC Irvine Travel Fund, Alpine Ski Club, Jeremy Wilson Charitable Trust, Imperial College Exploration Board, Leathersellers’ Company Charitable Fund, Gino Watkins Memorial Fund, Wallace Watson Award, CGCA Old Centralian’s Trust, University College Oxford Overbrook Fund. Tom Ellis’ time is supported by EPSRC grant EP/M002306/1 and BBSRC grant BB/K006290/1. Ingeborg Klarenberg (I.K.) is funded by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement (No 675546—MicroArctic).en_US
dc.description.versionPeer revieweden_US
dc.format.extent902en_US
dc.identifier.citationGowers, F. G., Vince, O., Charles, J., Klarenberg, I., Ellis, T. og Edwards, A. (2019). Entirely off-grid and solar-powered DNA sequencing of microbial communities during an ice cap traverse expedition. Genes, 10(11), 902. doi:10.3390/genes10110902en_US
dc.identifier.doi10.3390/genes10110902
dc.identifier.issn2073-4425 (eISSN)
dc.identifier.journalGenesen_US
dc.identifier.urihttps://hdl.handle.net/20.500.11815/1355
dc.language.isoenen_US
dc.publisherMDPI AGen_US
dc.relationinfo:eu-repo/grantAgreement/EC/H2020/675546en_US
dc.relation.ispartofseriesGenes;10(11)
dc.relation.urlhttps://www.mdpi.com/2073-4425/10/11/902/pdfen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectGeneticsen_US
dc.subjectGlaciersen_US
dc.subjectPolaren_US
dc.subjectErfðafræðien_US
dc.subjectJöklarannsókniren_US
dc.titleEntirely off-grid and solar-powered DNA sequencing of microbial communities during an ice cap traverse expeditionen_US
dc.typeinfo:eu-repo/semantics/articleen_US
dcterms.license© 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).en_US

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