dc.contributor |
Háskóli Íslands (HÍ) |
dc.contributor |
University of Iceland (UI) |
dc.contributor.author |
Ougaard Dohn, Asmus |
dc.contributor.author |
Selli, Daniele |
dc.contributor.author |
Fazio, Gianluca |
dc.contributor.author |
Ferraro, Lorenzo |
dc.contributor.author |
Mortensen, Jens |
dc.contributor.author |
Civalleri, Bartolomeo |
dc.contributor.author |
Di Valentin, Cristiana |
dc.date.accessioned |
2019-12-16T13:21:11Z |
dc.date.available |
2019-12-16T13:21:11Z |
dc.date.issued |
2018-11-13 |
dc.identifier.citation |
Ougaard Dohn, A.; Selli, D.; Fazio, G.; Ferraro, L.; Mortensen, J.J.; Civalleri, B.; Di Valentin, C. Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles. Molecules 2018, 23, 2958. |
dc.identifier.issn |
1420-3049 |
dc.identifier.uri |
https://hdl.handle.net/20.500.11815/1395 |
dc.description |
Publisher's version (útgefin grein) |
dc.description.abstract |
Metal oxide nanoparticles (NPs) are regarded as good candidates for many technological
applications, where their functional environment is often an aqueous solution. The correct description
of metal oxide electronic structure is still a challenge for local and semilocal density functionals,
whereas hybrid functional methods provide an improved description, and local atomic function-based
codes such as CRYSTAL17 outperform plane wave codes when it comes to hybrid functional
calculations. However, the computational cost of hybrids are still prohibitive for systems of real sizes,
in a real environment. Therefore, we here present and critically assess the accuracy of our electrostatic
embedding quantum mechanical/molecular mechanical (QM/MM) coupling between CRYSTAL17
and AMBER16, and demonstrate some of its capabilities via the case study of TiO2 NPs in water.
First, we produced new Lennard–Jones (LJ) parameters that improve the accuracy of water–water
interactions in the B3LYP/TIP3P coupling. We found that optimizing LJ parameters based on water
tri- to deca-mer clusters provides a less overstructured QM/MM liquid water description than when
fitting LJ parameters only based on the water dimer. Then, we applied our QM/MM coupling
methodology to describe the interaction of a 1 nm wide multilayer of water surrounding a spherical
TiO2 nanoparticle (NP). Optimizing the QM/MM water–water parameters was found to have little to
no effect on the local NP properties, which provide insights into the range of influence that can be
attributed to the LJ term in the QM/MM coupling. The effect of adding additional water in an MM
fashion on the geometry optimized nanoparticle structure is small, but more evident effects are seen
in its electronic properties. We also show that there is good transferability of existing QM/MM LJ
parameters for organic molecules–water interactions to our QM/MM implementation, even though
these parameters were obtained with a different QM code and QM/MM implementation, but with the
same functional. |
dc.description.sponsorship |
National Council for Eurasian and East European Research.
Funding: This research was funded by the Icelandic Research Fund (grant 174244-051) and VILLUM FONDEN,
the European Research Council (ERC) under the European Union’s HORIZON2020 research and innovation
programme (ERC Grant Agreement No [647020]).
Acknowledgments: A.O.D. Would like to thank Jónsson, H. for discussions about fitting strategies. C.D.V. is
grateful to Lara Ferrighi, Massimo Olivucci, and Stefano Motta for fruitful discussions. A.O.D. Acknowledges
funding from the Icelandic Research Fund (grant 174244-051) and VILLUM FONDEN. The project has received
funding from the European Research Council (ERC) under the European Union’s HORIZON2020 research and
innovation programme (ERC Grant Agreement No [647020]). |
dc.format.extent |
2958 |
dc.language.iso |
en |
dc.publisher |
MDPI AG |
dc.relation |
info:eu-repo/grantAgreement/EC/H2020/647020 |
dc.relation.ispartofseries |
Molecules;23(11) |
dc.rights |
info:eu-repo/semantics/openAccess |
dc.subject |
QM/MM |
dc.subject |
Multiscale |
dc.subject |
Nanoparticles |
dc.subject |
Force field parameters |
dc.subject |
Water |
dc.subject |
Titanium dioxide |
dc.subject |
Geometry optimization |
dc.subject |
Molecular dynamics |
dc.subject |
Nanótækni |
dc.subject |
Efnasambönd |
dc.title |
Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles |
dc.type |
info:eu-repo/semantics/article |
dcterms.license |
Licensee MDPI, Basel, Switzerland. This article is an open access
article distributed under the terms and conditions of the Creative Commons Attribution
(CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
dc.description.version |
Peer Reviewed |
dc.identifier.journal |
Molecules |
dc.identifier.doi |
10.3390/molecules23112958 |
dc.relation.url |
http://www.mdpi.com/1420-3049/23/11/2958/pdf |
dc.contributor.department |
Faculty of Physical Sciences (UI) |
dc.contributor.department |
Raunvísindadeild (HÍ) |
dc.contributor.department |
Raunvísindastofnun (HÍ) |
dc.contributor.department |
Science Institute (UI) |
dc.contributor.school |
School of Engineering and Natural Sciences (UI) |
dc.contributor.school |
Verkfræði- og náttúruvísindasvið (HÍ) |