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Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles

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dc.contributor Háskóli Íslands (HÍ)
dc.contributor University of Iceland (UI)
dc.contributor.author Ougaard Dohn, Asmus
dc.contributor.author Selli, Daniele
dc.contributor.author Fazio, Gianluca
dc.contributor.author Ferraro, Lorenzo
dc.contributor.author Mortensen, Jens
dc.contributor.author Civalleri, Bartolomeo
dc.contributor.author Di Valentin, Cristiana
dc.date.accessioned 2019-12-16T13:21:11Z
dc.date.available 2019-12-16T13:21:11Z
dc.date.issued 2018-11-13
dc.identifier.citation Ougaard Dohn, A.; Selli, D.; Fazio, G.; Ferraro, L.; Mortensen, J.J.; Civalleri, B.; Di Valentin, C. Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles. Molecules 2018, 23, 2958.
dc.identifier.issn 1420-3049
dc.identifier.uri https://hdl.handle.net/20.500.11815/1395
dc.description Publisher's version (útgefin grein)
dc.description.abstract Metal oxide nanoparticles (NPs) are regarded as good candidates for many technological applications, where their functional environment is often an aqueous solution. The correct description of metal oxide electronic structure is still a challenge for local and semilocal density functionals, whereas hybrid functional methods provide an improved description, and local atomic function-based codes such as CRYSTAL17 outperform plane wave codes when it comes to hybrid functional calculations. However, the computational cost of hybrids are still prohibitive for systems of real sizes, in a real environment. Therefore, we here present and critically assess the accuracy of our electrostatic embedding quantum mechanical/molecular mechanical (QM/MM) coupling between CRYSTAL17 and AMBER16, and demonstrate some of its capabilities via the case study of TiO2 NPs in water. First, we produced new Lennard–Jones (LJ) parameters that improve the accuracy of water–water interactions in the B3LYP/TIP3P coupling. We found that optimizing LJ parameters based on water tri- to deca-mer clusters provides a less overstructured QM/MM liquid water description than when fitting LJ parameters only based on the water dimer. Then, we applied our QM/MM coupling methodology to describe the interaction of a 1 nm wide multilayer of water surrounding a spherical TiO2 nanoparticle (NP). Optimizing the QM/MM water–water parameters was found to have little to no effect on the local NP properties, which provide insights into the range of influence that can be attributed to the LJ term in the QM/MM coupling. The effect of adding additional water in an MM fashion on the geometry optimized nanoparticle structure is small, but more evident effects are seen in its electronic properties. We also show that there is good transferability of existing QM/MM LJ parameters for organic molecules–water interactions to our QM/MM implementation, even though these parameters were obtained with a different QM code and QM/MM implementation, but with the same functional.
dc.description.sponsorship National Council for Eurasian and East European Research. Funding: This research was funded by the Icelandic Research Fund (grant 174244-051) and VILLUM FONDEN, the European Research Council (ERC) under the European Union’s HORIZON2020 research and innovation programme (ERC Grant Agreement No [647020]). Acknowledgments: A.O.D. Would like to thank Jónsson, H. for discussions about fitting strategies. C.D.V. is grateful to Lara Ferrighi, Massimo Olivucci, and Stefano Motta for fruitful discussions. A.O.D. Acknowledges funding from the Icelandic Research Fund (grant 174244-051) and VILLUM FONDEN. The project has received funding from the European Research Council (ERC) under the European Union’s HORIZON2020 research and innovation programme (ERC Grant Agreement No [647020]).
dc.format.extent 2958
dc.language.iso en
dc.publisher MDPI AG
dc.relation info:eu-repo/grantAgreement/EC/H2020/647020
dc.relation.ispartofseries Molecules;23(11)
dc.rights info:eu-repo/semantics/openAccess
dc.subject QM/MM
dc.subject Multiscale
dc.subject Nanoparticles
dc.subject Force field parameters
dc.subject Water
dc.subject Titanium dioxide
dc.subject Geometry optimization
dc.subject Molecular dynamics
dc.subject Nanótækni
dc.subject Efnasambönd
dc.title Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles
dc.type info:eu-repo/semantics/article
dcterms.license Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
dc.description.version Peer Reviewed
dc.identifier.journal Molecules
dc.identifier.doi 10.3390/molecules23112958
dc.relation.url http://www.mdpi.com/1420-3049/23/11/2958/pdf
dc.contributor.department Faculty of Physical Sciences (UI)
dc.contributor.department Raunvísindadeild (HÍ)
dc.contributor.department Raunvísindastofnun (HÍ)
dc.contributor.department Science Institute (UI)
dc.contributor.school School of Engineering and Natural Sciences (UI)
dc.contributor.school Verkfræði- og náttúruvísindasvið (HÍ)


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