Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles

dc.contributorHáskóli Íslands (HÍ)en_US
dc.contributorUniversity of Iceland (UI)en_US
dc.contributor.authorOugaard Dohn, Asmus
dc.contributor.authorSelli, Daniele
dc.contributor.authorFazio, Gianluca
dc.contributor.authorFerraro, Lorenzo
dc.contributor.authorMortensen, Jens
dc.contributor.authorCivalleri, Bartolomeo
dc.contributor.authorDi Valentin, Cristiana
dc.contributor.departmentFaculty of Physical Sciences (UI)en_US
dc.contributor.departmentRaunvísindadeild (HÍ)en_US
dc.contributor.departmentRaunvísindastofnun (HÍ)en_US
dc.contributor.departmentScience Institute (UI)en_US
dc.contributor.schoolSchool of Engineering and Natural Sciences (UI)en_US
dc.contributor.schoolVerkfræði- og náttúruvísindasvið (HÍ)en_US
dc.date.accessioned2019-12-16T13:21:11Z
dc.date.available2019-12-16T13:21:11Z
dc.date.issued2018-11-13
dc.descriptionPublisher's version (útgefin grein)en_US
dc.description.abstractMetal oxide nanoparticles (NPs) are regarded as good candidates for many technological applications, where their functional environment is often an aqueous solution. The correct description of metal oxide electronic structure is still a challenge for local and semilocal density functionals, whereas hybrid functional methods provide an improved description, and local atomic function-based codes such as CRYSTAL17 outperform plane wave codes when it comes to hybrid functional calculations. However, the computational cost of hybrids are still prohibitive for systems of real sizes, in a real environment. Therefore, we here present and critically assess the accuracy of our electrostatic embedding quantum mechanical/molecular mechanical (QM/MM) coupling between CRYSTAL17 and AMBER16, and demonstrate some of its capabilities via the case study of TiO2 NPs in water. First, we produced new Lennard–Jones (LJ) parameters that improve the accuracy of water–water interactions in the B3LYP/TIP3P coupling. We found that optimizing LJ parameters based on water tri- to deca-mer clusters provides a less overstructured QM/MM liquid water description than when fitting LJ parameters only based on the water dimer. Then, we applied our QM/MM coupling methodology to describe the interaction of a 1 nm wide multilayer of water surrounding a spherical TiO2 nanoparticle (NP). Optimizing the QM/MM water–water parameters was found to have little to no effect on the local NP properties, which provide insights into the range of influence that can be attributed to the LJ term in the QM/MM coupling. The effect of adding additional water in an MM fashion on the geometry optimized nanoparticle structure is small, but more evident effects are seen in its electronic properties. We also show that there is good transferability of existing QM/MM LJ parameters for organic molecules–water interactions to our QM/MM implementation, even though these parameters were obtained with a different QM code and QM/MM implementation, but with the same functional.en_US
dc.description.sponsorshipNational Council for Eurasian and East European Research. Funding: This research was funded by the Icelandic Research Fund (grant 174244-051) and VILLUM FONDEN, the European Research Council (ERC) under the European Union’s HORIZON2020 research and innovation programme (ERC Grant Agreement No [647020]). Acknowledgments: A.O.D. Would like to thank Jónsson, H. for discussions about fitting strategies. C.D.V. is grateful to Lara Ferrighi, Massimo Olivucci, and Stefano Motta for fruitful discussions. A.O.D. Acknowledges funding from the Icelandic Research Fund (grant 174244-051) and VILLUM FONDEN. The project has received funding from the European Research Council (ERC) under the European Union’s HORIZON2020 research and innovation programme (ERC Grant Agreement No [647020]).en_US
dc.description.versionPeer Revieweden_US
dc.format.extent2958en_US
dc.identifier.citationOugaard Dohn, A.; Selli, D.; Fazio, G.; Ferraro, L.; Mortensen, J.J.; Civalleri, B.; Di Valentin, C. Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles. Molecules 2018, 23, 2958.en_US
dc.identifier.doi10.3390/molecules23112958
dc.identifier.issn1420-3049
dc.identifier.journalMoleculesen_US
dc.identifier.urihttps://hdl.handle.net/20.500.11815/1395
dc.language.isoenen_US
dc.publisherMDPI AGen_US
dc.relationinfo:eu-repo/grantAgreement/EC/H2020/647020en_US
dc.relation.ispartofseriesMolecules;23(11)
dc.relation.urlhttp://www.mdpi.com/1420-3049/23/11/2958/pdfen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectQM/MMen_US
dc.subjectMultiscaleen_US
dc.subjectNanoparticlesen_US
dc.subjectForce field parametersen_US
dc.subjectWateren_US
dc.subjectTitanium dioxideen_US
dc.subjectGeometry optimizationen_US
dc.subjectMolecular dynamicsen_US
dc.subjectNanótæknien_US
dc.subjectEfnasambönden_US
dc.titleInterfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticlesen_US
dc.typeinfo:eu-repo/semantics/articleen_US
dcterms.licenseLicensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).en_US

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