Tandem mass tag-based quantitative proteomic profiling identifies candidate serum biomarkers of drug-induced liver injury in humans

dc.contributor.authorRavindra, Kodihalli C
dc.contributor.authorVaidya, Vishal S
dc.contributor.authorWang, Zhenyu
dc.contributor.authorFederspiel, Joel D
dc.contributor.authorVirgen-Slane, Richard
dc.contributor.authorEverley, Robert A
dc.contributor.authorGrove, Jane I
dc.contributor.authorStephens, Camilla
dc.contributor.authorOcana, Mireia F
dc.contributor.authorRobles-Díaz, Mercedes
dc.contributor.authorIsabel Lucena, M
dc.contributor.authorAndrade, Raul J
dc.contributor.authorAtallah, Edmond
dc.contributor.authorGerbes, Alexander L
dc.contributor.authorWeber, Sabine
dc.contributor.authorCortez-Pinto, Helena
dc.contributor.authorFowell, Andrew J
dc.contributor.authorHussaini, Hyder
dc.contributor.authorBjörnsson, Einar Stefán
dc.contributor.authorPatel, Janisha
dc.contributor.authorStirnimann, Guido
dc.contributor.authorVerma, Sumita
dc.contributor.authorElsharkawy, Ahmed M
dc.contributor.authorGriffiths, William J H
dc.contributor.authorHyde, Craig
dc.contributor.authorDear, James W
dc.contributor.authorAithal, Guruprasad P
dc.contributor.authorRamaiah, Shashi K
dc.contributor.departmentFaculty of Medicine
dc.date.accessioned2025-11-20T09:13:35Z
dc.date.available2025-11-20T09:13:35Z
dc.date.issued2023-03-03
dc.descriptionFunding Information: K.C.R., V.S.V., Z.W., J.D.F., V.S.R., R.E., M.F.O., C.H., and S.K.R. are employed by Pfizer. G.P.A. has served as a consultant and an advisory board member for Pfizer Inc, Inventiva Pharma, GlaxoSmithKline and KaNDy Therapeutics; he has been a consultant to BerGenBio ASA, Median Technologies, FRACTYL, Amryt Pharmaceuticals and AstraZeneca; and has given presentations on behalf of Roche Diagnostics and Medscape. A.G.: stockholder MetaHeps GmbH and owner of IP. E.S.B. is a member of the hepatic safety committee for Galmed pharmaceuticals in the Armor study. H.C.P. lectures and advisory board fees from Intercept, Orphalan, Novo Nordisk, Roche Portugal and EISAI. S.V. has served as a consultant for Abbvie and Gilead Sciences, and given presentations on behalf of Gilead Sciences, Abbvie and Dr Falk. J.W.D. is the Chief Investigator on the ALBATROSS and POP Trials funded by Egetis Therapeutics. A.J.F. is a consultant and advisory board member for Gilead Sciences, Dr Falk Pharma and Accelerated Enrollment Solutions and has given presentations on behalf of Intercept Pharmaceuticals. A.M.E. has been a consultant for GSK, SOBI and Gilead. The remaining authors declare no competing interests. Funding Information: We thank all our study participants and research study teams for their involvement in providing resources for this research. This article is supported by the members of COST Action “CA17112 - Prospective European Drug-Induced Liver Injury Network” supported by COST (European Cooperation in Science and Technology), www.cost.eu including J.I.G., C.S., M.R.-D., M.I.L., R.J.A., E.A., A.L.G., S.W., H.C.-P., E.S.B., G.S. and G.P.A. We acknowledge support from the members of the PRO-EURO-DILI Network for input on aligning protocols across multiple centers as well as in the case adjudication. We acknowledge Melanie Lingaya, Ryan Criswell, Deborah Hart, James Stejskal, Richard Giovanelli, Kelly Fader, and Heather Llewellyn for their assistance with sample processing. Funding was made available from the Drug Safety Research and Development department within Pfizer’s Worldwide Research Development and Medical. J.I.G., E.A., and G.P.A. are supported by NIHR Nottingham Biomedical Research Centre [BRC-1215-20003]. The views expressed are those of the authors and not necessarily those of the National Health Service (NHS), the NIHR or the Department of Health. Publisher Copyright: © 2023, The Author(s).en
dc.description.abstractDiagnosis of drug-induced liver injury (DILI) and its distinction from other liver diseases are significant challenges in drug development and clinical practice. Here, we identify, confirm, and replicate the biomarker performance characteristics of candidate proteins in patients with DILI at onset (DO; n = 133) and follow-up (n = 120), acute non-DILI at onset (NDO; n = 63) and follow-up (n = 42), and healthy volunteers (HV; n = 104). Area under the receiver operating characteristic curve (AUC) for cytoplasmic aconitate hydratase, argininosuccinate synthase, carbamoylphosphate synthase, fumarylacetoacetase, fructose-1,6-bisphosphatase 1 (FBP1) across cohorts achieved near complete separation (range: 0.94-0.99) of DO and HV. In addition, we show that FBP1, alone or in combination with glutathione S-transferase A1 and leukocyte cell-derived chemotaxin 2, could potentially assist in clinical diagnosis by distinguishing NDO from DO (AUC range: 0.65-0.78), but further technical and clinical validation of these candidate biomarkers is needed.en
dc.description.versionPeer revieweden
dc.format.extent2966107
dc.format.extent1215
dc.identifier.citationRavindra, K C, Vaidya, V S, Wang, Z, Federspiel, J D, Virgen-Slane, R, Everley, R A, Grove, J I, Stephens, C, Ocana, M F, Robles-Díaz, M, Isabel Lucena, M, Andrade, R J, Atallah, E, Gerbes, A L, Weber, S, Cortez-Pinto, H, Fowell, A J, Hussaini, H, Björnsson, E S, Patel, J, Stirnimann, G, Verma, S, Elsharkawy, A M, Griffiths, W J H, Hyde, C, Dear, J W, Aithal, G P & Ramaiah, S K 2023, 'Tandem mass tag-based quantitative proteomic profiling identifies candidate serum biomarkers of drug-induced liver injury in humans', Nature Communications, vol. 14, no. 1, 1215, pp. 1215. https://doi.org/10.1038/s41467-023-36858-6en
dc.identifier.doi10.1038/s41467-023-36858-6
dc.identifier.issn2041-1723
dc.identifier.other123499409
dc.identifier.otherce80b56f-edc2-452f-9589-463a6d68641e
dc.identifier.other36869085
dc.identifier.otherPubMedCentral: PMC9984368
dc.identifier.other85149550360
dc.identifier.otherunpaywall: 10.1038/s41467-023-36858-6
dc.identifier.urihttps://hdl.handle.net/20.500.11815/7170
dc.language.isoen
dc.relation.ispartofseriesNature Communications; 14(1)en
dc.relation.urlhttps://www.scopus.com/pages/publications/85149550360en
dc.rightsinfo:eu-repo/semantics/openAccessen
dc.subjectHumansen
dc.subjectProteomicsen
dc.subjectChemical and Drug Induced Liver Injuryen
dc.subjectArgininosuccinate Synthaseen
dc.subjectBiomarkersen
dc.subjectCD8 Antigensen
dc.subjectFructoseen
dc.subjectMultidisciplinaryen
dc.subjectGeneral Physics and Astronomyen
dc.subjectGeneral Chemistryen
dc.subjectGeneral Biochemistry,Genetics and Molecular Biologyen
dc.titleTandem mass tag-based quantitative proteomic profiling identifies candidate serum biomarkers of drug-induced liver injury in humansen
dc.type/dk/atira/pure/researchoutput/researchoutputtypes/contributiontojournal/articleen

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